microbial genomics

  1. Hall B, Levy S, Dufault-Thompson K, Arp G, Zhong A, Ndjite GM, Weiss A, Braccia D, Jenkins C, Yang Y, Arp G, Abeysinghe S, Jermain M, Wu CH, Jiang X. 2024. BilR is a gut microbial enzyme that reduces bilirubin to urobilinogen. Nature Microbiology. 9: 173-184. DOI: 10.1038/s41564-023-01549-x.
  2. Yang Y, Jiang X. 2023. Evolink: A Phylogenetic Approach for Rapid Identification of Genotype-Phenotype Associations in Large-scale Microbial Multi-Species Data. Bioinformatics. DOI: 10.1093/bioinformatics/btad215.
  3. Zhong A, Jiang X, Hickman AB, Klier K, Teodoro GIC, Dyda F, Laub TM, Storz S. 2023. Toxic antiphage defense proteins inhibited by intragenic antitoxin proteins. Proceedings of the National Academy of Sciences. 120: e2307382120. DOI: 10.1073/pnas.2307382120.
  4. Dufault-Thompson K, Hall AB, Jiang X. 2022. Taxonomic Distribution and Evolutionary Analysis of the Equol Biosynthesis Gene Cluster. BMC Genomics. 23: 1. DOI: 10.1186/s12864-022-08426-7.
  5. Olejniczak M, Jiang X, Basczok MM, Storz G. 2022. KH Domain Proteins: Another Family of Bacterial RNA Matchmakers. Molecular Microbiology. 117: 10-19. DOI: 10.1111/mmi.14842.
  6. Braccia D J, Ndjite G M, Weiss A, Levy S, Abeysinghe S, Jiang X, Pop M, Hall B. 2022. Gut microbiome-wide search for bacterial azoreductases reveals potentially uncharacterized azoreductases encoded in the human gut microbiome. Drug Metabolism and Disposition. DOI: 10.1124/dmd.122.000898.
  7. Zhang X, Wang R, Xie X, Hu Y, Wang J, Sun Q, Feng X, Lin W, Tong S, Yan W, Wen H, Wang M, Zhai S, Sun C, Wang F, Niu Q, Kropinski A M, Cui Y, Jiang X, Peng S, Li S, Tong Y. 2022. Mining bacterial NGS data vastly expands the complete genomes of temperate phages. NAR genomics and bioinformatics. 4: lqac057. DOI: 10.1093/nargab/lqac057.
  8. Yan W, Hall AB, Jiang X. 2022. Bacteroidales Species in the Human Gut Are a Reservoir of Antibiotic Resistance Genes Regulated by Invertible Promoters. Npj Biofilms and Microbiomes. 8: 1. DOI: 10.1038/s41522-021-00260-1.
  9. Mou Z, Yang Y, Hall AB, Jiang X. 2021. The Taxonomic Distribution of Histamine-Secreting Bacteria in the Human Gut Microbiome. BMC Genomics. 22: 695. DOI: 10.1186/s12864-021-08004-3.
  10. Braccia DJ, Jiang X, Pop M, Hall AB. 2021. The Capacity to Produce Hydrogen Sulfide (H2S) via Cysteine Degradation Is Ubiquitous in the Human Gut Microbiome. Frontiers in Microbiology. 12: 705583. DOI: 10.3389/fmicb.2021.705583.

backā€¦