TailspikeDB

TailspikeDB (tailspike protein database) is a database dedicated to the collection, classification, and annotation of prophage tailspike proteins from five bacteria pathogen genomes. In addition, this database provides the associations between tailspike proteins and bacterial surface glycans (determining the bacterial serotypes).

Blast

Blast your phage protein/gene sequence against the tailspike protein database to get an idea if it is likely to be a potential tailspike protein.

Calculation in progress..

Results

Alignment:


              

Access to data

Dedicated pages have been provided for the tailspike protein clusters associated with five different pathogen species, facilitating exploration of each individually. To begin, simply select the page corresponding to a specific species by clicking on the tab labeled with the species name. This action will provide you with more detailed information.


Each species-specific section allows data to be easily copied, downloaded, or printed in various formats, enhancing accessibility and use. For in-depth details on tailspike protein clusters and their relationships with bacterial surface polysaccharides, utilize the “Copy”, “CSV”, “Excel”, “PDF”, and “Print” options located at the top of each species page. Additionally, clicking on individual tailspike protein clusters will navigate users to a more comprehensive page, where all sequences within the cluster and the PDB structure of the cluster's representative sequence are available for download.


For your convenience in downloading data, users will find downloadable links for tailspike protein data specific to each species, as well as databases necessary for the Blast service:

Tailspike protein clusters associated with Escherichia coli/Shigella serotypes (.tsv)
Tailspike protein clusters associated with Klebsiella serotypes (.tsv)
Tailspike protein clusters associated with Salmonella serotypes (.tsv)
Tailspike protein clusters associated with Acinetobacter serotypes (.tsv)
Tailspike protein clusters associated with Pseudomonas aeruginosa serotypes (.tsv)
All tailspike protein sequences for Blast (.fasta)
All tailspike nucleotide sequences for Blast (.fasta)


Please note that all data shared is under the CC0 license, ensuring open access for all users.